 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 25, 2024 |
| Title |
Brain_C_Control_S41 |
| Sample type |
SRA |
| |
|
| Source name |
Brain tissue
|
| Organism |
Bombus impatiens |
| Characteristics |
tissue: Brain tissue
|
| Treatment protocol |
Control or exposed to metal
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Qiagen RNEasy Mini Kit
Quant-Seq mRNA libraries were prepared by the Iowa State University DNA Facility following manufacturer’s protocols, and subjected to Illumina Quant-Seq using a HiSEQ 3000 Sequencer
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Description |
1-C11-D1_S41
|
| Data processing |
nf-core RNASeq pipeline v3.14.0 using Nextflow 24.04.2
Raw reads were trimmed with trim galore, mappes with star, then gene counts quantified with Salmon
Assembly: BIMP3.0 JBEUIP000000000, SUB14541561
Supplementary files format and content: tab delimitd file with the raw counts for each sample (brain and fatbody in separate tsv files)
|
| |
|
| Submission date |
Jul 17, 2024 |
| Last update date |
Nov 25, 2024 |
| Contact name |
Christopher Douglas Robert Wyatt |
| E-mail(s) |
[email protected]
|
| Organization name |
UCL
|
| Street address |
Gower street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL34712 |
| Series (1) |
| GSE272415 |
New genomic resources inform transcriptomic responses to heavy metal toxins in the common Eastern bumble bee Bombus impatiens |
|
| Relations |
| BioSample |
SAMN42556919 |
| SRA |
SRX25355949 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
