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GEO accession:
Sample GSM83895
Query DataSets for GSM83895
Status
Public on Jun 01, 2007
Title
potilas_DC_E
Sample type
RNA
Source name
monocyte derived DCs
Organism
Homo sapiens
Characteristics
in vitro differentiated DCs
Growth protocol
IL-4+GM-CSF for seven days
Extracted molecule
total RNA
Extraction protocol
Trizol + RNeasy
Label
biotin
Label protocol
Enzo Bioarray High Yield RNA Transcript labeling kit
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Description
TREM2mut
Data processing
MAS 5.0, scaled to 100
Submission date
Nov 17, 2005
Last update date
May 31, 2007
Contact name
Anna Kiialainen
E-mail(s)
[email protected]
Phone
+46186114951
Organization name
Uppsala University
Department
Deapartment of Medical Sciences
Street address
University Hospital, Entrance 70
City
Uppsala
ZIP/Postal code
75185
Country
Sweden
Platform ID
GPL96
Series (1)
GSE3624
Transcript profiles of DCs of PLOSL patients show abnormalities in pathways of actin bundling and immune response
Data table header descriptions
ID_REF
Stat Pairs
number of perfect and mismatch probes
Stat Pairs Used
number of probes used
VALUE
MAS5 transformed
ABS_CALL
Affymetrix flags
DETECTION P-VALUE
p-value for detection
Signal Log Ratio
column is empty
Change
column is empty
Data table
ID_REF
Stat Pairs
Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE
Signal Log Ratio
Change
AFFX-BioB-5_at
20
20
74.5
M
0.062929
AFFX-BioB-M_at
20
20
101.0
P
0.000297
AFFX-BioB-3_at
20
20
57.7
P
0.023929
AFFX-BioC-5_at
20
20
239.9
P
0.000225
AFFX-BioC-3_at
20
20
207.6
P
0.000081
AFFX-BioDn-5_at
20
20
280.1
P
0.000060
AFFX-BioDn-3_at
20
20
1101.4
P
0.000446
AFFX-CreX-5_at
20
20
2118.2
P
0.000044
AFFX-CreX-3_at
20
20
3365.5
P
0.000044
AFFX-DapX-5_at
20
20
9.8
A
0.205732
AFFX-DapX-M_at
20
20
2.5
A
0.712257
AFFX-DapX-3_at
20
20
2.8
A
0.937071
AFFX-LysX-5_at
20
20
2.5
A
0.760937
AFFX-LysX-M_at
20
20
6.3
A
0.686277
AFFX-LysX-3_at
20
20
10.6
A
0.396920
AFFX-PheX-5_at
20
20
1.9
A
0.686277
AFFX-PheX-M_at
20
20
3.3
A
0.852082
AFFX-PheX-3_at
20
20
6.1
A
0.794268
AFFX-ThrX-5_at
20
20
5.2
A
0.794268
AFFX-ThrX-M_at
20
20
4.1
A
0.843268
Total number of rows:
22283
Table truncated, full table size
762 Kbytes
.
Supplementary data files not provided
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