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Sample GSM83108 Query DataSets for GSM83108
Status Public on Mar 01, 2006
Title ASO T00278951
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Male C57Bl/6 Mice were 10.5 weeks old at time of sacrifice.
Treatment protocol Male C57Bl/6 mice injected i.p. 2x/week for 4 weeks with 50mg/kg miR-122 ASO, sacrificed 2 days after last dose.
Extracted molecule total RNA
Extraction protocol For RNA isolation, liver was homogenized in RNeasy RLT buffer using Polytron homogenizer, layered onto 5.7M CsCl2 and pelleted after overnight centrifugation at 35000 rpm, room temp. The pellet was resuspended in RLT buffer and RNA was isolated on RNeasy midi columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description mir-122 antisense used is a 2'-O-methoxyethyl phosphorothioate modified antisense RNA oligonucleotide with sequence 5'-ACAAACACCAUUGUCACACUCCA-3'
Data processing CodeLink Expression Analysis 4.1.0.29054
 
Submission date Nov 11, 2005
Last update date Nov 14, 2005
Contact name Michael Pear
E-mail(s) [email protected]
Phone 760-603-2779
URL http://www.isspharm.com
Organization name Isis Pharmaceuticals, Inc.
Department Research Informatics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92009
Country USA
 
Platform ID GPL2897
Series (1)
GSE3603 Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.

Data table header descriptions
ID_REF
VALUE Intensity normalized by median of spot-based raw intensity
RAW_INTENSITY Raw signal intensities corrected for background
QUALITY Numerical Quality score from codes G,S (Good, Saturated) =>1, L (near background) => .5, I, C, CI, CL (Ireggular, Background Contaminated) => 0

Data table
ID_REF VALUE RAW_INTENSITY QUALITY
1001 70.14744423 1361.939453
1002 1.884682686 36.59183502 1
1003 0.218898599 4.25 0.5
1004 0.734431174 14.25926208 1
1005 0.568075925 11.02941132 0.5
1006 0.488522339 9.484848022 0.5
1007 90.30175184 1753.243042
1008 74.92705515 1454.737427
1010 0.972167307 18.875 1
1012 0.435912973 8.463417053 0.5
1013 0.543261135 10.54762268 1
1014 95.40613318 1852.346558
1015 99.11228841 1924.302979
1017 0.321595732 6.243904114 0.5
1018 0.331306072 6.432434082 0.5
1019 0.207683629 4.03225708 0.5
1020 0.035520881 0.689651489 0.5
1021 77.9942762 1514.288696
1022 72.06313391 1399.133301
1024 0.361894175 7.026313782 0.5

Total number of rows: 36227

Table truncated, full table size 1155 Kbytes.




Supplementary data files not provided

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