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Sample GSM83107 Query DataSets for GSM83107
Status Public on Mar 01, 2006
Title ASO T00278950
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Male C57Bl/6 Mice were 10.5 weeks old at time of sacrifice.
Treatment protocol Male C57Bl/6 mice injected i.p. 2x/week for 4 weeks with 50mg/kg miR-122 ASO, sacrificed 2 days after last dose.
Extracted molecule total RNA
Extraction protocol For RNA isolation, liver was homogenized in RNeasy RLT buffer using Polytron homogenizer, layered onto 5.7M CsCl2 and pelleted after overnight centrifugation at 35000 rpm, room temp. The pellet was resuspended in RLT buffer and RNA was isolated on RNeasy midi columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description mir-122 antisense used is a 2'-O-methoxyethyl phosphorothioate modified antisense RNA oligonucleotide with sequence 5'-ACAAACACCAUUGUCACACUCCA-3'
Data processing CodeLink Expression Analysis 4.1.0.29054
 
Submission date Nov 11, 2005
Last update date Nov 14, 2005
Contact name Michael Pear
E-mail(s) [email protected]
Phone 760-603-2779
URL http://www.isspharm.com
Organization name Isis Pharmaceuticals, Inc.
Department Research Informatics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92009
Country USA
 
Platform ID GPL2897
Series (1)
GSE3603 Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.

Data table header descriptions
ID_REF
VALUE Intensity normalized by median of spot-based raw intensity
RAW_INTENSITY Raw signal intensities corrected for background
QUALITY Numerical Quality score from codes G,S (Good, Saturated) =>1, L (near background) => .5, I, C, CI, CL (Ireggular, Background Contaminated) => 0

Data table
ID_REF VALUE RAW_INTENSITY QUALITY
1001 81.42387278 1940.785767
1002 2.557413182 60.95744324 1
1003 0.213303467 5.084213257 0.5
1004 0.928758221 22.13749695 1
1005 0.489813961 11.67500305 1
1006 0.661508403 15.7674408 1
1007 117.5489181 2801.847412
1008 135.674861 3233.889893
1010 1.528543828 36.43373871 1
1012 0.796391243 18.98245239 1
1013 0.867292133 20.67241669 1
1014 123.7507773 2949.672363
1015 111.8530583 2666.083252
1017 0.128659122 3.066665649 0.5
1018 0.158027167 3.766670227 0.5
1019 0.057867702 1.379310608 0.5
1020 0.306391953 7.303031921 0.5
1021 69.59598333 1658.861084
1022 121.0048749 2884.222168
1024 0.281956086 6.720588684 0.5

Total number of rows: 36227

Table truncated, full table size 1149 Kbytes.




Supplementary data files not provided

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