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Sample GSM83105 Query DataSets for GSM83105
Status Public on Mar 01, 2006
Title ASO T00278948
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Male C57Bl/6 Mice were 10.5 weeks old at time of sacrifice.
Treatment protocol Male C57Bl/6 mice injected i.p. 2x/week for 4 weeks with 50mg/kg miR-122 ASO, sacrificed 2 days after last dose.
Extracted molecule total RNA
Extraction protocol For RNA isolation, liver was homogenized in RNeasy RLT buffer using Polytron homogenizer, layered onto 5.7M CsCl2 and pelleted after overnight centrifugation at 35000 rpm, room temp. The pellet was resuspended in RLT buffer and RNA was isolated on RNeasy midi columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description mir-122 antisense used is a 2'-O-methoxyethyl phosphorothioate modified antisense RNA oligonucleotide with sequence 5'-ACAAACACCAUUGUCACACUCCA-3'
Data processing CodeLink Expression Analysis 4.1.0.29054
 
Submission date Nov 11, 2005
Last update date Nov 14, 2005
Contact name Michael Pear
E-mail(s) [email protected]
Phone 760-603-2779
URL http://www.isspharm.com
Organization name Isis Pharmaceuticals, Inc.
Department Research Informatics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92009
Country USA
 
Platform ID GPL2897
Series (1)
GSE3603 Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.

Data table header descriptions
ID_REF
VALUE Intensity normalized by median of spot-based raw intensity
RAW_INTENSITY Raw signal intensities corrected for background
QUALITY Numerical Quality score from codes G,S (Good, Saturated) =>1, L (near background) => .5, I, C, CI, CL (Ireggular, Background Contaminated) => 0

Data table
ID_REF VALUE RAW_INTENSITY QUALITY
1001 93.86027521 1534.615356
1002 2.04445441 33.42682648 1
1003 0.342507584 5.599998474 0.5
1004 1.169493431 19.12121582 1
1005 0.489296682 8 0.5
1006 0.92716144 15.15908813 1
1007 120.2537831 1966.14917
1008 140.5061383 2297.275146
1010 1.339619613 21.90277863 1
1012 0.847318769 13.85366058 1
1013 1.0950366 17.90384674 1
1014 74.95527028 1225.518555
1015 138.5063053 2264.577881
1017 0.161060033 2.633331299 0.5
1018 0.185751743 3.03704071 0.5
1019 0.27043943 4.421684265 0.5
1020 0.220468058 3.604652405 0.5
1021 167.2726438 2734.907471
1022 153.6563599 2512.28125
1024 0.325646854 5.324325562 0.5

Total number of rows: 36227

Table truncated, full table size 1156 Kbytes.




Supplementary data files not provided

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