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| Status |
Public on Jan 18, 2024 |
| Title |
root, CdOP, rep3 |
| Sample type |
SRA |
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| Source name |
root
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| Organism |
Glycine max |
| Characteristics |
tissue: root
treatment: Cd+OP
cell type: Soybean root cell
cultivar: Williams 82
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| Treatment protocol |
Cd 70mg/L
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with TRIzol (thermofisher, 15596018), and the repository was constructed with illumina NovaseqTM 6000 (LC Bio Technology CO.,Ltd. Hangzhou,China).
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
CdOP_3
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| Data processing |
TheoriginalDatageneratedbysequencingneedtobepreprocessedandfiltered(seethedescriptionoftheanalysismethodforfilteringcriteria)toobtainvaliddata(CleanData),thencomparedwiththereferencegenome,andfinallycarriedoutgenequantitativeanalysis.
Assembly: gmx_Ensembl_v54
Supplementary files format and content: 1_genes_fpkm_expression.txt
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| Submission date |
Jan 10, 2024 |
| Last update date |
Jan 18, 2024 |
| Contact name |
Yang Shangjun |
| E-mail(s) |
[email protected]
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| Organization name |
Northeast Agricultural University
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| Street address |
Mucai Street
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| City |
Harbin |
| ZIP/Postal code |
150006 |
| Country |
China |
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| Platform ID |
GPL28801 |
| Series (1) |
| GSE252910 |
OceanobacilluspicturaeAlleviatesCdstressandpromotesgrowthinsoybeanseedlings |
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| Relations |
| BioSample |
SAMN39334580 |
| SRA |
SRX23153637 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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