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Sample GSM798901 Query DataSets for GSM798901
Status Public on Oct 31, 2011
Title Wild Type B220+, biological replicate 4
Sample type RNA
 
Source name Wild Type B220+
Organism Mus musculus
Characteristics strain background: C57Bl/6
genotype/variation: wild type
age: 4-6wks
tissue source: bone marrrow or spleen
Extracted molecule total RNA
Extraction protocol B cells were obtained from bone marrow or spleen by MACS using bead conjugated to antibodies against B220 or IgM. RNA was prepared using the RNeasy Kit (Qiagen).
Label biotin
Label protocol cRNA was synthesized using the One-Cycle Target Labeling and Control Reagent package (Affymetrix, Inc.).
 
Hybridization protocol Fragmentation/hybridization to MOE430A arrays (Affymetrix) were performed according to Affymetrix protocols.
Scan protocol Imaging was performed according to standard Affymetrix protocol.
Description Gene expression data from EμΜyc mice 4-6 weeks old.
Data processing The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
 
Submission date Sep 20, 2011
Last update date Oct 31, 2011
Contact name John Lamoine Cleveland
Organization name H. Lee Moffitt Cancer Center
Street address 12902 USF Magnolia Drive
City Tampa
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL339
Series (1)
GSE32239 Gene Expression profiling of Myc-induced lymphomagenesis

Data table header descriptions
ID_REF
VALUE GCRMA signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 119.09771
AFFX-BioB-M_at 303.34
AFFX-BioB-3_at 87.110405
AFFX-BioC-5_at 269.60727
AFFX-BioC-3_at 234.60101
AFFX-BioDn-5_at 466.36707
AFFX-BioDn-3_at 1541.163
AFFX-CreX-5_at 7069.954
AFFX-CreX-3_at 9511.322
AFFX-DapX-5_at 6.3800535
AFFX-DapX-M_at 5.6956277
AFFX-DapX-3_at 5.882858
AFFX-LysX-5_at 7.1575346
AFFX-LysX-M_at 5.2923946
AFFX-LysX-3_at 6.924523
AFFX-PheX-5_at 5.652236
AFFX-PheX-M_at 5.489991
AFFX-PheX-3_at 7.6043005
AFFX-ThrX-5_at 7.134584
AFFX-ThrX-M_at 7.095256

Total number of rows: 22690

Table truncated, full table size 469 Kbytes.




Supplementary file Size Download File type/resource
GSM798901_jan102-430a.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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