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Sample GSM798899 Query DataSets for GSM798899
Status Public on Oct 31, 2011
Title Wild Type B220+, biological replicate 2
Sample type RNA
 
Source name Wild Type B220+
Organism Mus musculus
Characteristics strain background: C57Bl/6
genotype/variation: wild type
age: 4-6wks
tissue source: bone marrrow or spleen
Extracted molecule total RNA
Extraction protocol B cells were obtained from bone marrow or spleen by MACS using bead conjugated to antibodies against B220 or IgM. RNA was prepared using the RNeasy Kit (Qiagen).
Label biotin
Label protocol cRNA was synthesized using the One-Cycle Target Labeling and Control Reagent package (Affymetrix, Inc.).
 
Hybridization protocol Fragmentation/hybridization to MOE430A arrays (Affymetrix) were performed according to Affymetrix protocols.
Scan protocol Imaging was performed according to standard Affymetrix protocol.
Description Gene expression data from EμΜyc mice 4-6 weeks old.
Data processing The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
 
Submission date Sep 20, 2011
Last update date Oct 31, 2011
Contact name John Lamoine Cleveland
Organization name H. Lee Moffitt Cancer Center
Street address 12902 USF Magnolia Drive
City Tampa
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL339
Series (1)
GSE32239 Gene Expression profiling of Myc-induced lymphomagenesis

Data table header descriptions
ID_REF
VALUE GCRMA signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 81.35451
AFFX-BioB-M_at 167.2291
AFFX-BioB-3_at 83.52633
AFFX-BioC-5_at 226.50102
AFFX-BioC-3_at 193.71799
AFFX-BioDn-5_at 214.61525
AFFX-BioDn-3_at 1025.5865
AFFX-CreX-5_at 3388.2375
AFFX-CreX-3_at 6859.5054
AFFX-DapX-5_at 7.10724
AFFX-DapX-M_at 6.44271
AFFX-DapX-3_at 6.564815
AFFX-LysX-5_at 8.154583
AFFX-LysX-M_at 5.5225477
AFFX-LysX-3_at 7.615171
AFFX-PheX-5_at 6.1561103
AFFX-PheX-M_at 5.818296
AFFX-PheX-3_at 7.6860766
AFFX-ThrX-5_at 8.117608
AFFX-ThrX-M_at 8.668787

Total number of rows: 22690

Table truncated, full table size 470 Kbytes.




Supplementary file Size Download File type/resource
GSM798899_jan041-430a.CEL.gz 2.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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