|
| Status |
Public on Dec 31, 2023 |
| Title |
input DNA |
| Sample type |
SRA |
| |
|
| Source name |
mouse hepatocytes
|
| Organism |
Mus musculus |
| Characteristics |
cell type: mouse hepatocytes
strain: C57Bl6J
genotype: pool DNA
treatment: tamoxifen
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
phenol/chloroform
MeDIP-seq service (Active motif)
|
| |
|
| Library strategy |
MeDIP-Seq |
| Library source |
genomic |
| Library selection |
5-methylcytidine antibody |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
mapped to the genome using the BWA algorithm with default settings
Illumina’s purity filter, align with no more than 2 mismatches
MACS and Sicer for peak finding
Assembly: mouse genome (mm10)
Supplementary files format and content: BigWig
|
| |
|
| Submission date |
Aug 01, 2023 |
| Last update date |
Dec 31, 2023 |
| Contact name |
Angelique Gougelet |
| E-mail(s) |
[email protected]
|
| Organization name |
INSERM U1138
|
| Street address |
15 rue de l'école de médecine
|
| City |
Paris |
| ZIP/Postal code |
75006 |
| Country |
France |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE239777 |
MeDIP-seq profiles of mouse ApcDHep hepatocytes at day 6 vs wt hepatocytes |
|
| Relations |
| BioSample |
SAMN36795469 |
| SRA |
SRX21218699 |
