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Sample GSM762815 Query DataSets for GSM762815
Status Public on Jul 19, 2011
Title S68_expanded islet, RC treatment
Sample type RNA
 
Source name expanded islet, RC treatment
Organism Homo sapiens
Characteristics sample origin: Pancreatic Islets from individual donors
cell type: re-differentiated beta-cells
experiment batch: 2011-02-24
Growth protocol Redifferentiation Cocktail (RC) treatment consisted of 6 days in SFM supplemented with 25 mM D-glucose, N2 and B27 supplements (Stem Cell Technologies), 10 mM nicotinamide (Sigma), 8 nM exendin-4 (Acris), and 8 nM activin A (Peprotech), followed by 2 days in the same medium lacking activin A and containing a reduced glucose concentration (5.6 mM).
Extracted molecule total RNA
Extraction protocol according to the manufacturer's protocol (Trizol, Sigma-Aldrich)
Label biotin
Label protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
 
Hybridization protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
Scan protocol according to the manufacturer's protocol (Affymetrix, Santa Clara, CA, USA)
Description gene expression data of re-differentiation cells
Data processing Gene-level analyses was performed. RMA normalization, summarization by mean and batch effect removal, all were done by Partek Genomics suite (version 6.5) Copyright.
 
Submission date Jul 18, 2011
Last update date Jul 19, 2011
Contact name Metsada Pasmanik-Chor
E-mail(s) [email protected]
Organization name Tel Aviv University
Department Biology
Lab Bioinformatics Unit
Street address Ramat Aviv
City Tel Aviv
ZIP/Postal code 69978
Country Israel
 
Platform ID GPL6244
Series (1)
GSE30732 Insulin-producing cells generated from dedifferentiated human pancreatic beta cells expanded in vitro

Data table header descriptions
ID_REF
VALUE RMA-normalized

Data table
ID_REF VALUE
8157281 8.10375
7997332 46.3579
8072798 17.6245
7972808 79.3799
8157283 253.154
7947375 16.7926
7972810 145.861
8097335 147.083
8047377 25.134
7997336 121.857
8047379 239.792
8047381 443.808
8022856 120.552
8157300 74.0132
8072817 65.4778
7997346 70.1475
8107348 37.3876
8157308 120.601
8107350 434.967
8072825 59.223

Total number of rows: 32968

Table truncated, full table size 511 Kbytes.




Supplementary file Size Download File type/resource
GSM762815.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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