|
| Status |
Public on Aug 18, 2011 |
| Title |
NA19239_D_trep1_brep2 |
| Sample type |
RNA |
| |
|
| Source name |
lymphoblastoid cell line
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: EBV-transformed B lymphocytes
population: Yoruba in Ibadan, Nigeria
treatment: dexamethasone
lcl_id: NA19239
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with QIAGEN RNeasy Plus mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyzer.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
technical replicate 1, biological replicate 2
|
| Data processing |
The data were normalised using quantile normalisation with lumi in R
|
| |
|
| Submission date |
May 17, 2011 |
| Last update date |
Aug 18, 2011 |
| Contact name |
Joseph C Maranville |
| E-mail(s) |
[email protected]
|
| Phone |
7738345239
|
| Organization name |
920 E. 58th Street
|
| Street address |
920 E. 58th Street
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE29342 |
Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes |
|
