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| Status |
Public on Mar 14, 2024 |
| Title |
CT46_02154AAC_GCCATT |
| Sample type |
SRA |
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| Source name |
Liver
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| Organism |
Rattus norvegicus |
| Characteristics |
tissue: Liver
strain: Sprague Dawley
treatment: None -Control
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol and further purification with Qiagen Rneasy Mini kit with DNAseI on-column digestion
TruSeq stranded mRNA Library Prep (Illumina)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Description |
rno.counts_matrix.tsv
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| Data processing |
Sequence reads were quality-checked with FASTQC and trimmed for adaptor sequence/low-quality sequence using trim-galore
Trimmed reads were mapped to human genome Rnor_release92 using STAR-2.7.9a
Read count quantification was performed with featureCounts from subRead 2.0.3
Assembly: Rnor_release92
Supplementary files format and content: tab-delimited text files include raw counts for each Sample
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| Submission date |
Apr 11, 2023 |
| Last update date |
Mar 14, 2024 |
| Contact name |
Genís Camprecios |
| Organization name |
IDIBAPS
|
| Department |
Hepatic Hemodynamics
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| Street address |
Rosselló 153
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| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08036 |
| Country |
Spain |
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| Platform ID |
GPL18694 |
| Series (1) |
| GSE229380 |
Rat models for Portosinusoidal Vascular Disease |
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| Relations |
| SRA |
SRX19927583 |
| BioSample |
SAMN34139893 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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