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Sample GSM683848

Query DataSets for GSM683848

Status

Public on Mar 01, 2011

Title

Myers_BC_Pancreas_H12817N_1_None_BioChain

Sample type

SRA

Source name

BC_Pancreas_H12817N

Organism

Homo sapiens

Characteristics

cell: BC_Pancreas_H12817N
cell organism: Human
cell description: Donor H12817N; Age 71; Caucasian; DNA and RNA Extract
cell karyotype: Normal
cell lineage: Pancreas
cell sex: M
replicate: 1
treatment: None
obtainedby: BioChain

Biomaterial provider

BioChain

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:Myers_BioChain_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Description

Reduced Representation

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

Mar 01, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX066345

BioSample

SAMN00621826

Supplementary file	Size	Download	File type/resource
GSM683848_hg19_wgEncodeHaibMethylRrbsBcpancreash12817nBiochainSitesRep1.bedRrbs.gz	17.0 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA