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Sample GSM683810

Query DataSets for GSM683810

Status

Public on Mar 01, 2011

Title

Myers_PFSK-1_1_None_HudsonAlpha

Sample type

SRA

Source name

PFSK-1

Organism

Homo sapiens

Characteristics

cell: PFSK-1
cell organism: Human
cell description: neuroectodermal cell line derived from a human cerebral brain tumor
cell karyotype: cancer
cell lineage: ectoderm
cell sex: M
replicate: 1
treatment: None
obtainedby: HudsonAlpha

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:PFSK-1_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Description

Reduced Representation

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

Mar 01, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX066310

BioSample

SAMN00621791

Supplementary file	Size	Download	File type/resource
GSM683810_hg19_wgEncodeHaibMethylRrbsPfsk1HaibSitesRep1.bedRrbs.gz	15.6 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA