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Sample GSM680046 Query DataSets for GSM680046
Status Public on Nov 16, 2013
Title Muscle biopsies from healthy individual #15 after 8w training
Sample type RNA
 
Source name Trained healthy
Organism Homo sapiens
Characteristics tissue: musculus vastus lateralis
disease state: healthy
exercise state: trained
bmi: normal
individual: 15
Treatment protocol 8 weeks of exercise training.
Extracted molecule total RNA
Extraction protocol RNA was isolated using the RNeasy extraction kit (QIAGEN, USA) according to the manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of cRNA was performed with the Affymetrix IVT labeling kit.
 
Hybridization protocol Affymetrix GeneChip technology was performed using Human U133 Plus2 GeneChips according to the manufacturer's suggested protocols.
Scan protocol Affymetrix Scanner 3000 7G.
Description Gene expression data from muscle biopsies of a trained healthy individual.
Data processing The data were quantile normalized using the R package RMA.
 
Submission date Feb 25, 2011
Last update date Nov 16, 2013
Contact name Nil Turan
E-mail(s) [email protected]
Organization name University of Birmingham
Street address University of Birmingham, Edgbaston
City Birmingham
ZIP/Postal code B15 2TT
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE27536 Vastus lateralis biopsies from healthy and COPD patients before and after 8 weeks of exercise training

Data table header descriptions
ID_REF
VALUE Quantile-normalized expression value

Data table
ID_REF VALUE
1007_s_at 7.482907239
1053_at 5.958827939
117_at 3.083326862
121_at 2.499106929
1255_g_at 2.157256344
1294_at 5.02582867
1316_at 3.670919126
1320_at 2.688781885
1405_i_at 4.230250776
1431_at 2.788505519
1438_at 2.258061461
1487_at 9.046149178
1494_f_at 2.483486686
1552256_a_at 4.99320655
1552257_a_at 4.470361087
1552258_at 2.333839703
1552261_at 2.499350418
1552263_at 2.622690958
1552264_a_at 6.704851717
1552266_at 2.600927771

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM680046_CT_15_3.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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