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Sample GSM67081 Query DataSets for GSM67081
Status Public on Aug 06, 2005
Title Arabidopsis_Ovary04
Sample type RNA
 
Source name plant ovaries
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler) flowers
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) [email protected], [email protected], [email protected]
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expression value determined from probe set
ABS_CALL present or absent
DETECTION P-VALUE for presence of mRNA

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 265.9 P 0.010317
AFFX-BioB-M_at 187.1 P 0.000044
AFFX-BioB-3_at 164.9 P 0.007620
AFFX-BioC-5_at 533.9 P 0.000297
AFFX-BioC-3_at 259.9 P 0.002867
AFFX-BioDn-5_at 399.4 P 0.000044
AFFX-BioDn-3_at 2625.3 P 0.000070
AFFX-CreX-5_at 4700.3 P 0.000044
AFFX-CreX-3_at 7160.1 P 0.000044
AFFX-DapX-5_at 19.2 A 0.323735
AFFX-DapX-M_at 28.6 A 0.313723
AFFX-DapX-3_at 6.0 A 0.904333
AFFX-LysX-5_at 2.4 A 0.910522
AFFX-LysX-M_at 53.4 A 0.470241
AFFX-LysX-3_at 18.4 A 0.327079
AFFX-PheX-5_at 4.5 A 0.927300
AFFX-PheX-M_at 6.6 A 0.876428
AFFX-PheX-3_at 9.6 A 0.783476
AFFX-ThrX-5_at 8.2 A 0.914381
AFFX-ThrX-M_at 38.9 A 0.411380

Total number of rows: 22810

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM67081.cel.gz 3.4 Mb (ftp)(http) CEL
GSM67081.chp.gz 6.1 Mb (ftp)(http) CHP
GSM67081.dat.gz 29.6 Mb (ftp)(http) DAT
GSM67081.exp.gz 505 b (ftp)(http) EXP
GSM67081.rpt.gz 803 b (ftp)(http) RPT
Processed data provided as supplementary file

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