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Sample GSM67079 Query DataSets for GSM67079
Status Public on Aug 06, 2005
Title Arabidopsis_Ovary02
Sample type RNA
 
Source name plant ovary
Organism Arabidopsis thaliana
Characteristics Arabidosis thaliana ovaries
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) [email protected], [email protected], [email protected]
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expresson value calculated by Affymetrix software for multiple probes
ABS_CALL Affymetrix software reports a P for present, and A for absent.
DETECTION P-VALUE likelihood that the mRNA was present in the sample; smaller value more likely.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 248.8 P 0.002556
AFFX-BioB-M_at 268.8 P 0.000070
AFFX-BioB-3_at 200.1 P 0.001248
AFFX-BioC-5_at 519.1 P 0.000147
AFFX-BioC-3_at 320.4 P 0.000081
AFFX-BioDn-5_at 478.9 P 0.000044
AFFX-BioDn-3_at 2430.6 P 0.000052
AFFX-CreX-5_at 4737.4 P 0.000044
AFFX-CreX-3_at 7508.9 P 0.000044
AFFX-DapX-5_at 41.1 A 0.083592
AFFX-DapX-M_at 27.8 A 0.485110
AFFX-DapX-3_at 37.0 A 0.659339
AFFX-LysX-5_at 19.9 A 0.368438
AFFX-LysX-M_at 4.6 A 0.916408
AFFX-LysX-3_at 3.4 A 0.672921
AFFX-PheX-5_at 5.6 A 0.876428
AFFX-PheX-M_at 6.6 A 0.712257
AFFX-PheX-3_at 9.0 A 0.834139
AFFX-ThrX-5_at 3.0 A 0.868639
AFFX-ThrX-M_at 18.2 A 0.514890

Total number of rows: 22810

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM67079.cel.gz 3.3 Mb (ftp)(http) CEL
GSM67079.chp.gz 5.9 Mb (ftp)(http) CHP
GSM67079.dat.gz 27.4 Mb (ftp)(http) DAT
GSM67079.exp.gz 515 b (ftp)(http) EXP
GSM67079.rpt.gz 811 b (ftp)(http) RPT
Processed data provided as supplementary file

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