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Sample GSM67078 Query DataSets for GSM67078
Status Public on Aug 06, 2005
Title Arabidopsis_Ovary01
Sample type RNA
 
Source name plant ovary
Organism Arabidopsis thaliana
Characteristics Arabidosis thaliana ovaries
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) [email protected], [email protected], [email protected]
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expresson value calculated by Affymetrix software for multiple probes.
ABS_CALL Affymetrix software reports a P for present, and A for absent.
DETECTION P-VALUE likelihood that the mRNA was present in the sample; smaller value more likely.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 203.1 P 0.001102
AFFX-BioB-M_at 265.2 P 0.000127
AFFX-BioB-3_at 180.5 P 0.000509
AFFX-BioC-5_at 498.1 P 0.000070
AFFX-BioC-3_at 311.0 P 0.000070
AFFX-BioDn-5_at 507.5 P 0.000044
AFFX-BioDn-3_at 2181.4 P 0.000052
AFFX-CreX-5_at 5101.5 P 0.000044
AFFX-CreX-3_at 6109.6 P 0.000044
AFFX-DapX-5_at 26.6 A 0.095667
AFFX-DapX-M_at 14.7 A 0.396920
AFFX-DapX-3_at 4.4 A 0.953518
AFFX-LysX-5_at 13.8 A 0.382599
AFFX-LysX-M_at 24.6 A 0.749204
AFFX-LysX-3_at 1.2 A 0.686277
AFFX-PheX-5_at 3.3 A 0.953518
AFFX-PheX-M_at 21.1 A 0.529760
AFFX-PheX-3_at 7.1 A 0.876428
AFFX-ThrX-5_at 3.8 A 0.824672
AFFX-ThrX-M_at 4.6 A 0.860518

Total number of rows: 22810

Table truncated, full table size 597 Kbytes.




Supplementary file Size Download File type/resource
GSM67078.cel.gz 3.4 Mb (ftp)(http) CEL
GSM67078.chp.gz 6.1 Mb (ftp)(http) CHP
GSM67078.dat.gz 28.7 Mb (ftp)(http) DAT
GSM67078.exp.gz 513 b (ftp)(http) EXP
GSM67078.rpt.gz 804 b (ftp)(http) RPT
Processed data provided as supplementary file

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