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Sample GSM66954 Query DataSets for GSM66954
Status Public on Aug 04, 2006
Title Lymphocytes_bottle-grown_rep1
Sample type RNA
 
Source name bottle-grown lymphocytes
Organism Homo sapiens
Characteristics human venous lymphocytes
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: Coculture-Lymphos-16-10_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 02, 2005
Last update date Aug 04, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL91
Series (1)
GSE3054 Establishing and Characterizing a Cell Culture Model for M Cells

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 63.3 A 0.852061
AFFX-MurIL10_at 62.8 A 0.699394
AFFX-MurIL4_at 34 A 0.58862
AFFX-MurFAS_at 39.4 A 0.51605
AFFX-BioB-5_at 3048.3 P 0.000662
AFFX-BioB-M_at 6471.4 P 0.000052
AFFX-BioB-3_at 3520.8 P 0.000127
AFFX-BioC-5_at 11943.6 P 0.00006
AFFX-BioC-3_at 7843 P 0.000044
AFFX-BioDn-5_at 9079.4 P 0.000052
AFFX-BioDn-3_at 45403.2 P 0.000078
AFFX-CreX-5_at 58008.5 P 0.000066
AFFX-CreX-3_at 65062.2 P 0.000107
AFFX-BioB-5_st 129.1 A 0.354453
AFFX-BioB-M_st 493 A 0.239063
AFFX-BioB-3_st 169.5 A 0.843268
AFFX-BioC-5_st 111 A 0.737173
AFFX-BioC-3_st 64.5 A 0.544587
AFFX-BioDn-5_st 1423.3 P 0.021902
AFFX-BioDn-3_st 745.1 P 0.004484

Total number of rows: 12626

Table truncated, full table size 319 Kbytes.




Supplementary data files not provided

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