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Sample GSM66953 Query DataSets for GSM66953
Status Public on Aug 04, 2006
Title Caco-2-cells_bottle-grown_not-induced_rep1
Sample type RNA
 
Source name bottle-grown not-induced Caco-2-cells
Organism Homo sapiens
Characteristics colon adeno carcinoma cell line (Caco-2)
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: Coculture-Cacos-pur-16-10_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 02, 2005
Last update date Aug 04, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL91
Series (1)
GSE3054 Establishing and Characterizing a Cell Culture Model for M Cells

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 85.6 A 0.794268
AFFX-MurIL10_at 44.6 A 0.724854
AFFX-MurIL4_at 137.5 A 0.382599
AFFX-MurFAS_at 150.5 A 0.175328
AFFX-BioB-5_at 2826.6 P 0.000662
AFFX-BioB-M_at 4044.1 P 0.00007
AFFX-BioB-3_at 2829.1 P 0.00011
AFFX-BioC-5_at 8881.7 P 0.000081
AFFX-BioC-3_at 6372 P 0.000044
AFFX-BioDn-5_at 6672 P 0.000044
AFFX-BioDn-3_at 37814.9 P 0.00007
AFFX-CreX-5_at 89654.8 P 0.000052
AFFX-CreX-3_at 76852.3 P 0.000044
AFFX-BioB-5_st 586 A 0.250796
AFFX-BioB-M_st 269 A 0.368438
AFFX-BioB-3_st 77.5 A 0.960339
AFFX-BioC-5_st 60.8 A 0.852061
AFFX-BioC-3_st 129.4 A 0.52976
AFFX-BioDn-5_st 948.9 M 0.054213
AFFX-BioDn-3_st 863.8 P 0.021902

Total number of rows: 12626

Table truncated, full table size 319 Kbytes.




Supplementary data files not provided

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