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Sample GSM66949 Query DataSets for GSM66949
Status Public on Aug 04, 2006
Title Caco-2-cells_filter-grown_lymphocyte-induced_rep1
Sample type RNA
 
Source name filter-grown lymphocyte-induced Caco-2-cells and lymphocytes from human venous blood
Organism Homo sapiens
Characteristics colon adeno carcinoma cell line (Caco-2) on a Transwell filter, induced by human venous lymphocytes
Extracted molecule total RNA
Extraction protocol lysis in RLT buffer (Qiagen); total-RNA extracted with RNeasy kit (Qiagen)
Label biotin
Label protocol during in-vitro transcription; standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description original experiment name: Coculture-Caco1_08_01_TGT1000
Data processing Affymetrix Microarray Suite version 5.0, statistical algorithm, scaling target value 1000
 
Submission date Aug 02, 2005
Last update date Aug 04, 2005
Contact name Martin Eisenacher
E-mail(s) [email protected], [email protected]
URL http://ifg-izkf.uni-muenster.de/
Organization name Westfaelische Wilhelms-Universitaet Muenster
Department Integrierte Funktionelle Genomik (IFG)
Lab Bioinformatik
Street address von-Esmarch-Str. 56
City Muenster
State/province NRW
ZIP/Postal code D-48149
Country Germany
 
Platform ID GPL91
Series (1)
GSE3054 Establishing and Characterizing a Cell Culture Model for M Cells

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5 statistical algorithm-calculated Signal intensity, scaling target value 1000
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the reliability of the measurement (correlated with Absence or Presence of transcript)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 457.7 A 0.724854
AFFX-MurIL10_at 103.3 A 0.783476
AFFX-MurIL4_at 72.5 A 0.760937
AFFX-MurFAS_at 137.2 A 0.737173
AFFX-BioB-5_at 18291.7 P 0.000446
AFFX-BioB-M_at 34977.7 P 0.000044
AFFX-BioB-3_at 15634.2 P 0.000044
AFFX-BioC-5_at 46127 P 0.000052
AFFX-BioC-3_at 27829.3 P 0.000044
AFFX-BioDn-5_at 51353.3 P 0.000044
AFFX-BioDn-3_at 177652.9 P 0.000044
AFFX-CreX-5_at 328497.7 P 0.000044
AFFX-CreX-3_at 321347.8 P 0.000044
AFFX-BioB-5_st 3927 P 0.00844
AFFX-BioB-M_st 2353.1 A 0.095667
AFFX-BioB-3_st 383.3 A 0.824672
AFFX-BioC-5_st 170.3 A 0.824672
AFFX-BioC-3_st 373.7 A 0.425962
AFFX-BioDn-5_st 1780.1 A 0.102165
AFFX-BioDn-3_st 3933.3 P 0.003212

Total number of rows: 12626

Table truncated, full table size 320 Kbytes.




Supplementary data files not provided

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