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Sample GSM651786 Query DataSets for GSM651786
Status Public on Mar 15, 2011
Title BXD31/TyJ_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: BXD31/TyJ
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXD31/TyJ_striatum_pval

Data table
ID_REF VALUE BXD31/TyJ_striatum_pval
ILMN_1248788 132.3775 0.6516291
ILMN_2707227 176.586 0.02756892
ILMN_2896528 5241.726 0
ILMN_2721178 1268.456 0
ILMN_1227723 324.725 0
ILMN_3033922 2197.769 0
ILMN_3092673 7034.251 0
ILMN_2730714 5136.783 0
ILMN_3162224 2744.85 0
ILMN_2816356 192.3956 0.006265664
ILMN_2808939 1287.318 0
ILMN_2634564 556.9645 0
ILMN_1216623 718.2232 0
ILMN_1215157 1035.832 0
ILMN_1228777 147.9106 0.2318296
ILMN_2737647 156.6893 0.1152882
ILMN_1216425 123.1308 0.9022557
ILMN_2734484 668.1137 0
ILMN_2652961 143.4148 0.3233083
ILMN_2952292 184.1931 0.01378446

Total number of rows: 25697

Table truncated, full table size 719 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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