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Sample GSM651467 Query DataSets for GSM651467
Status Public on Mar 15, 2011
Title BXA13/PgnJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXA13/PgnJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXA13/PgnJ_hippo_pval

Data table
ID_REF VALUE BXA13/PgnJ_hippo_pval
ILMN_1248788 132.9381 0.377193
ILMN_2707227 162.992 0.05513784
ILMN_2896528 4000.017 0
ILMN_2721178 940.1904 0
ILMN_1227723 394.7451 0
ILMN_3033922 1877.335 0
ILMN_3092673 5069.38 0
ILMN_2730714 4051.054 0
ILMN_3162224 1998.974 0
ILMN_2816356 172.5921 0.03258145
ILMN_2808939 1414.065 0
ILMN_2634564 637.2517 0
ILMN_1216623 802.0494 0
ILMN_1215157 1035.448 0
ILMN_1228777 151.7847 0.1115288
ILMN_2737647 129.7715 0.4411027
ILMN_1216425 131.0188 0.4085213
ILMN_2734484 936.0695 0
ILMN_2652961 116.045 0.7781955
ILMN_2952292 166.9921 0.04636591

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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