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Sample GSM64888 Query DataSets for GSM64888
Status Public on Apr 11, 2006
Title Treatment: RTI-6413-018; time: 6 hrs; repeat: 1; chip B
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with SARM for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 20, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1771_U133B_18.6.1_Stat Pairs Probe pairs available (PM/MM)
0068_1771_U133B_18.6.1_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1771_U133B_18.6.1_Stat Pairs 0068_1771_U133B_18.6.1_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 957 P 0.000754
AFFX-BioB-M_at 20 20 2043.8 P 0.000044
AFFX-BioB-3_at 20 20 1211 P 0.000127
AFFX-BioC-5_at 20 20 2979.1 P 0.000081
AFFX-BioC-3_at 20 20 2324.4 P 0.00007
AFFX-BioDn-5_at 20 20 2589.5 P 0.00007
AFFX-BioDn-3_at 20 20 13642.5 P 0.000127
AFFX-CreX-5_at 20 20 22212.1 P 0.000044
AFFX-CreX-3_at 20 20 33699.8 P 0.000044
AFFX-DapX-5_at 20 20 44.7 A 0.368438
AFFX-DapX-M_at 20 20 88.8 A 0.275146
AFFX-DapX-3_at 20 20 119.7 A 0.699394
AFFX-LysX-5_at 20 20 32.5 A 0.712257
AFFX-LysX-M_at 20 20 121.3 A 0.617401
AFFX-LysX-3_at 20 20 73.7 A 0.262827
AFFX-PheX-5_at 20 20 5.3 A 0.945787
AFFX-PheX-M_at 20 20 21.7 A 0.724854
AFFX-PheX-3_at 20 20 31.3 A 0.804734
AFFX-ThrX-5_at 20 20 26.5 A 0.794268
AFFX-ThrX-M_at 20 20 56.4 A 0.440646

Total number of rows: 22645

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64888.CEL.gz 3.3 Mb (ftp)(http) CEL

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