NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM64863 Query DataSets for GSM64863
Status Public on Apr 11, 2006
Title Treatment: RTI-6413-018; time: 6 hrs; repeat: 3
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with SARM for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1719_H133A_186.3_Stat Pairs Probe pairs available (PM/MM)
0068_1719_H133A_186.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1719_H133A_186.3_Stat Pairs 0068_1719_H133A_186.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 252.6 P 0.000857
AFFX-BioB-M_at 20 20 671.8 P 0.000169
AFFX-BioB-3_at 20 20 441.2 P 0.000225
AFFX-BioC-5_at 20 20 891.2 P 0.000169
AFFX-BioC-3_at 20 20 800.7 P 0.000081
AFFX-BioDn-5_at 20 20 1097 P 0.00007
AFFX-BioDn-3_at 20 20 5039.5 P 0.00006
AFFX-CreX-5_at 20 20 7958.2 P 0.000044
AFFX-CreX-3_at 20 20 11823.9 P 0.000044
AFFX-DapX-5_at 20 20 18 A 0.185131
AFFX-DapX-M_at 20 20 27.3 A 0.455413
AFFX-DapX-3_at 20 20 3.8 A 0.868639
AFFX-LysX-5_at 20 20 6.7 A 0.686277
AFFX-LysX-M_at 20 20 11.3 A 0.686277
AFFX-LysX-3_at 20 20 6.6 A 0.617401
AFFX-PheX-5_at 20 20 2.8 A 0.932322
AFFX-PheX-M_at 20 20 11.4 A 0.659339
AFFX-PheX-3_at 20 20 17.2 A 0.58862
AFFX-ThrX-5_at 20 20 4.7 A 0.860518
AFFX-ThrX-M_at 20 20 4.8 A 0.860518

Total number of rows: 22283

Table truncated, full table size 722 Kbytes.




Supplementary file Size Download File type/resource
GSM64863.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap