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Sample GSM64845 Query DataSets for GSM64845
Status Public on Apr 11, 2006
Title Treatment: Vehicle; Time: 24 hrs; Repeat: 1
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-66413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with ethanol vehicle for 24 hrs.
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1707_H133A_V24.1_Stat Pairs Probe pairs available (PM/MM)
0068_1707_H133A_V24.1_Stat Pairs Used Prove pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1707_H133A_V24.1_Stat Pairs 0068_1707_H133A_V24.1_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 249.6 P 0.015183
AFFX-BioB-M_at 20 20 399.5 P 0.000509
AFFX-BioB-3_at 20 20 240.1 P 0.001796
AFFX-BioC-5_at 20 20 677.4 P 0.000446
AFFX-BioC-3_at 20 20 461 P 0.00034
AFFX-BioDn-5_at 20 20 638.2 P 0.000169
AFFX-BioDn-3_at 20 20 4627 P 0.000581
AFFX-CreX-5_at 20 20 6004.4 P 0.000044
AFFX-CreX-3_at 20 20 8088.1 P 0.000044
AFFX-DapX-5_at 20 20 19.5 A 0.239063
AFFX-DapX-M_at 20 20 39.5 A 0.089478
AFFX-DapX-3_at 20 20 3.4 A 0.883887
AFFX-LysX-5_at 20 20 31 A 0.175328
AFFX-LysX-M_at 20 20 15.1 A 0.631562
AFFX-LysX-3_at 20 20 3.9 A 0.712257
AFFX-PheX-5_at 20 20 20.3 A 0.574038
AFFX-PheX-M_at 20 20 3.6 A 0.937071
AFFX-PheX-3_at 20 20 14 A 0.868639
AFFX-ThrX-5_at 20 20 8.9 A 0.772364
AFFX-ThrX-M_at 20 20 12.3 A 0.544588

Total number of rows: 22283

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64845.CEL.gz 3.5 Mb (ftp)(http) CEL

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