|
| Status |
Public on Nov 18, 2022 |
| Title |
MARCM yki3SA sd batch2 2 |
| Sample type |
SRA |
| |
|
| Source name |
eye-antennal imaginal discs
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: eye-antennal imaginal discs
genotype: sd47M FRT19A/tub-Gal80 FRT19A; ey-FLP Act 5C<y+<Gal4 UAS-GFP/+; UAS-yki3SA/+
batch: seq run 2
time point: 5 days after egg laying
group: MARCM yki3SA sd-
|
| Growth protocol |
All larvae were raised on standard fly food at 25°C.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Drosophila imaginal discs were dissected and transferred into RNAse-free 1xPBS on ice; a minimum of 30 discs per sample were used.
RNA was extracted immediately using the RNAeasy mini spin kit (Qiagen) and stored at -80°C.
Library preparation was performed according to the QuantSeq 3’ mRNA-Seq Library Prep kit FWD (Lexogen).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
MARCM_Counts.txt
|
| Data processing |
Quality control and trimming of the sequencing reads was performed using FastQC and Cutadapt (-q 15 --minmum-length 60)
Trimmed sequence reads were mapped to dm6 using STAR v2.6.1d (with default mapping parameters).
Reads were counted with STAR --quantMode GeneCounts
Assembly: dm6
Supplementary files format and content: Tab-delimited text files with raw gene counts for every gene and every sample in a given experiment
|
| |
|
| Submission date |
Aug 17, 2022 |
| Last update date |
Nov 18, 2022 |
| Contact name |
Georg Halder |
| E-mail(s) |
[email protected]
|
| Organization name |
VIB-KU Leuven
|
| Department |
VIB-KU Leuven Center for Cancer Biology
|
| Lab |
Laboratory of Growth Control
|
| Street address |
Herestraat 49
|
| City |
Leuven |
| ZIP/Postal code |
3000 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL19132 |
| Series (2) |
| GSE211458 |
Hippo signaling instructs ectopic but not normal organ growth [Drosophila YkiHyper] |
| GSE211461 |
Hippo signaling instructs ectopic but not normal organ growth |
|
| Relations |
| BioSample |
SAMN30370789 |
| SRA |
SRX17116772 |
