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Sample GSM640449 Query DataSets for GSM640449
Status Public on Jan 19, 2012
Title CH12173_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.70472189672951 98.30664087 4.456465 0.2103896 25
ILMN_2055271 6.65577414153138 95.25018583 3.377266 0.2428571 16
ILMN_1736007 6.51839931248096 86.93284934 3.516458 0.8311688 29
ILMN_2383229 6.75218696014799 101.4183214 5.621202 0.0948052 19
ILMN_1806310 6.54937191489609 88.77377937 4.18586 0.7 12
ILMN_1779670 6.63612349321619 94.01783506 4.007185 0.4402598 23
ILMN_1653355 6.64569080028671 94.611326 2.929403 0.2649351 21
ILMN_1717783 6.57380521157755 90.25156294 2.989764 0.6337662 21
ILMN_1705025 6.66044856443227 95.53090388 5.6441 0.3272727 16
ILMN_1814316 6.67301484249377 96.28305743 4.772183 0.2948052 21
ILMN_2359168 6.50298400782163 86.060853 2.287997 0.8818182 30
ILMN_1731507 6.65789914974971 95.37875216 4.950399 0.3558442 24
ILMN_1787689 6.69199689487772 97.50464248 7.103276 0.2090909 13
ILMN_3241953 7.6225397786888 168.4619853 10.18523 0 28
ILMN_1745607 6.516959374422 86.85495722 2.367949 0.7805195 21
ILMN_2136495 6.40923991862833 80.61336124 3.21492 0.987013 18
ILMN_1668111 6.61042580089164 92.47011535 5.912389 0.4727273 18
ILMN_2295559 6.60171184963926 91.93270132 6.471643 0.4350649 16
ILMN_1735045 6.61919344364365 92.98824897 5.894662 0.425974 18
ILMN_1680754 6.78491468555057 103.4417155 5.122719 0.05844156 16

Total number of rows: 47231

Table truncated, full table size 2839 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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