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Sample GSM639939 Query DataSets for GSM639939
Status Public on May 27, 2011
Title Fezf1+/- 2
Sample type RNA
 
Source name FACS isolated Fezf1 expressing cells from Fezf1+/- MOE
Organism Mus musculus
Characteristics genotype: Fezf1 +/-
age: E18.5
cell type: Fezf1 +/- cells from Main Olfactory Epithelium
genetic background: C57BL/6
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Plus Micro Kit according to manufacture's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (GeneChip Whole Transcript (WT) Sense Target Laebeling Assay Manuel Version 4, 2007, Affymetrix).
 
Hybridization protocol Labeled cRNA were fragmented and hybridized according to the standard Affymetrix protocol (GeneChip Whole Transcript (WT) Sense Target Laebeling Assay Manuel Version 4, 2007, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using Affymetrix GeneChip Scanner 3000 7G
Data processing GC-RMA normalization using Affymetrix Expression Console
 
Submission date Dec 14, 2010
Last update date May 27, 2011
Contact name Matthew Joseph Eckler
E-mail(s) [email protected]
Organization name UCSC
Department MCDB
Lab Bin Chen
Street address 434 Sinsheimer Labs, UCSC
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Platform ID GPL6246
Series (1)
GSE26064 Gene Expression Analysis of Fezf1 Mutant Main Olfactory Epithelium

Data table header descriptions
ID_REF
VALUE GC-RMA Expression Score

Data table
ID_REF VALUE
10338001 12.609
10338002 6.89584
10338003 10.8808
10338004 9.54268
10338005 2.77078
10338006 2.98939
10338007 3.29615
10338008 3.91864
10338009 9.49851
10338010 2.78657
10338011 6.18088
10338012 2.87464
10338013 2.65505
10338014 2.71609
10338015 2.68782
10338016 8.48668
10338017 13.5022
10338018 7.52507
10338019 5.50306
10338020 9.32729

Total number of rows: 35557

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM639939_Matthew_Eckler_ME02__MoGene_1_0_st_v1_.CEL.gz 4.1 Mb (ftp)(http) CEL
GSM639939_Matthew_Eckler_ME02__MoGene_1_0_st_v1_.rma_gene_default.chp.gz 270.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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