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Status
Public on Jul 08, 2005
Title
control (day 0) replicate 1
Sample type
RNA
Source name
Thymuse
Organism
Mus musculus Characteristics
Femal C57BL/6, ovariectomized
Extracted molecule
total RNA
Label
biotin
Description
21-day-old felmale C57BL/6 mice from Harlan (Indianapolis, IN) were ovariectomized on day 26 and fed with phytoestrogen-free diet two days later (AIN-93G purified rodent diet, Dyets, In., Bethlehem, PA). Experimental treatments began on day 30. RNA samples were extracted at day0 without any treatment. Total 6 animals were used. RNA from 3 animals were pooled together as one sample, resulting in two independent biological replicates.
Data processing
Affymetrix Microarray Suite Version 5.0
Submission date
Jul 07, 2005
Last update date
Jul 07, 2005
Contact name
Lei Liu
E-mail(s)
[email protected] Phone
217-265-5061
Organization name
University of Illinois at Urbana-Champaign
Department
W. M. Keck Center
Street address
1201 W. Gregory
City
Urbana
State/province
IL
ZIP/Postal code
61801
Country
USA
Platform ID
GPL339 Series (1)
GSE2889 Gene Expression Profiling of 17 beta-Estradiol and Genistein Effects on Mouse Thymus
Data table header descriptions ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript wa present (P), absent (A), marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
57.4
P
0.00844
AFFX-BioB-M_at
59.4
P
0.00039
AFFX-BioB-3_at
31.9
P
0.006871
AFFX-BioC-5_at
130
P
0.000225
AFFX-BioC-3_at
74.7
P
0.000225
AFFX-BioDn-5_at
97.5
P
0.000147
AFFX-BioDn-3_at
714
P
0.00039
AFFX-CreX-5_at
1144.3
P
0.000044
AFFX-CreX-3_at
1688.1
P
0.000044
AFFX-DapX-5_at
8.2
A
0.139482
AFFX-DapX-M_at
11.8
A
0.116113
AFFX-DapX-3_at
1
A
0.932322
AFFX-LysX-5_at
1.1
A
0.760937
AFFX-LysX-M_at
2.2
A
0.860518
AFFX-LysX-3_at
9.4
M
0.062929
AFFX-PheX-5_at
1.1
A
0.904333
AFFX-PheX-M_at
2.3
A
0.814869
AFFX-PheX-3_at
5
A
0.544587
AFFX-ThrX-5_at
2.9
A
0.804734
AFFX-ThrX-M_at
10.3
A
0.354453
22690 610 Kbytes .Supplementary data files not provided
