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Sample GSM63122

Query DataSets for GSM63122

Status

Public on Apr 11, 2006

Title

Treatment: DHT; time: 6 hrs; repeat: 1

Sample type

RNA

Source name

LNCaP cells

Organism

Homo sapiens

Characteristics

LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.

Treatment protocol

In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.

Extracted molecule

polyA RNA

Label

Biotin

Description

DHT-treated for 6 hrs

Data processing

Standard Affymetrix scanning/normalization process

Submission date

Jul 06, 2005

Last update date

Apr 10, 2006

Contact name

Dmitri A Kazmin

E-mail(s)

[email protected]

Organization name

Stanford University

Department

Institute for Immunity, Transplantation and Infection

Lab

Bali Pulendran

Street address

240 Pasteur Dr

City

Palo Alto

State/province

ZIP/Postal code

94304

Country

USA

Platform ID

GPL96

Series (1)

GSE4636

Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1705_H133A_T6.1_Stat Pairs	Probe pairs available (PM/MM)
0068_1705_H133A_T6.1_Stat Pairs Used	Prove pairs used (PM/MM)
VALUE	Absolute measured signal
ABS_CALL	Present/absent call
DETECTION P-VALUE	P-value for the P/A call

Data table
ID_REF	0068_1705_H133A_T6.1_Stat Pairs	0068_1705_H133A_T6.1_Stat Pairs Used	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	20	20	230.7	P	0.00762
AFFX-BioB-M_at	20	20	529.5	P	0.00039
AFFX-BioB-3_at	20	20	276	P	0.004484
AFFX-BioC-5_at	20	20	717.4	P	0.000195
AFFX-BioC-3_at	20	20	518.9	P	0.000127
AFFX-BioDn-5_at	20	20	731.7	P	0.00011
AFFX-BioDn-3_at	20	20	4906.6	P	0.000258
AFFX-CreX-5_at	20	20	6859	P	0.000044
AFFX-CreX-3_at	20	20	10039.6	P	0.000044
AFFX-DapX-5_at	20	20	28.8	A	0.227636
AFFX-DapX-M_at	20	20	25.4	A	0.574038
AFFX-DapX-3_at	20	20	6.2	A	0.883887
AFFX-LysX-5_at	20	20	19.9	A	0.175328
AFFX-LysX-M_at	20	20	11.2	A	0.834139
AFFX-LysX-3_at	20	20	18.7	A	0.470241
AFFX-PheX-5_at	20	20	2.3	A	0.957038
AFFX-PheX-M_at	20	20	7.3	A	0.868639
AFFX-PheX-3_at	20	20	18.3	A	0.737173
AFFX-ThrX-5_at	20	20	10.1	A	0.794268
AFFX-ThrX-M_at	20	20	36.4	A	0.425962

Total number of rows: 22283

Table truncated, full table size 724 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM63122.CEL.gz	3.5 Mb	(ftp)(http)	CEL