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Sample GSM628668 Query DataSets for GSM628668
Status Public on Dec 03, 2010
Title G2019S-CBY
Sample type RNA
 
Source name fibroblasts
Organism Homo sapiens
Characteristics cell type: patient derived fibroblast cells
disease status: control
lrrk2 mutation: G2019S
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description CN
Data processing The data were normalised using quantile normalisation with Beadstudio v3.2
 
Submission date Nov 23, 2010
Last update date Nov 23, 2010
Contact name Marcel van der Brug
Organization name NIH
Department NIA
Lab Neurogenetics
Street address 9000 Rockville Pike
City Bethesda
ZIP/Postal code 20892
Country USA
 
Platform ID GPL6947
Series (1)
GSE25580 Examination of impact of pathogenic mutations in LRRK2 upon gene expression in patient fibroblasts and HEK cells

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 114.5999 17 4.26433 0.5248322
ILMN_2055271 122.178 15 3.072717 0.2389262
ILMN_1736007 128.168 23 7.586035 0.104698
ILMN_2383229 113.9105 22 5.407776 0.5463087
ILMN_1806310 140.5451 19 7.722551 0.009395973
ILMN_1779670 149.3363 24 8.549329 0
ILMN_2321282 123.5409 14 7.950347 0.1986577
ILMN_1671474 118.0486 18 3.258473 0.3892618
ILMN_1772582 110.6617 25 3.29168 0.6912752
ILMN_1735698 116.2452 29 3.469513 0.4590604
ILMN_1653355 181.4065 15 14.23387 0
ILMN_1717783 136.3447 23 9.491611 0.02684564
ILMN_1705025 108.7807 19 4.703265 0.7758389
ILMN_1814316 107.2764 15 4.902175 0.8469799
ILMN_2359168 122.4915 20 5.434191 0.2295302
ILMN_1731507 103.2625 23 3.745435 0.9288591
ILMN_1787689 119.574 27 4.813791 0.3234899
ILMN_1745607 120.6691 22 4.830396 0.2778524
ILMN_2136495 103.4283 16 3.565952 0.9261745
ILMN_1668111 107.6779 22 5.026519 0.8308725

Total number of rows: 48803

Table truncated, full table size 1977 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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