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Sample GSM628667 Query DataSets for GSM628667
Status Public on Dec 03, 2010
Title G2019S-AZO
Sample type RNA
 
Source name fibroblasts
Organism Homo sapiens
Characteristics cell type: patient derived fibroblast cells
disease status: control
lrrk2 mutation: G2019S
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description CN
Data processing The data were normalised using quantile normalisation with Beadstudio v3.2
 
Submission date Nov 23, 2010
Last update date Nov 23, 2010
Contact name Marcel van der Brug
Organization name NIH
Department NIA
Lab Neurogenetics
Street address 9000 Rockville Pike
City Bethesda
ZIP/Postal code 20892
Country USA
 
Platform ID GPL6947
Series (1)
GSE25580 Examination of impact of pathogenic mutations in LRRK2 upon gene expression in patient fibroblasts and HEK cells

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 100.3205 21 3.329963 0.9823609
ILMN_2055271 142.4923 15 9.590336 0.004070556
ILMN_1736007 127.6702 20 7.002379 0.1234735
ILMN_2383229 111.7834 16 7.523327 0.6580732
ILMN_1806310 110.9006 27 4.887029 0.70692
ILMN_1779670 122.2915 24 3.657231 0.238806
ILMN_2321282 122.954 20 5.620605 0.2238806
ILMN_1671474 124.6622 21 4.194615 0.183175
ILMN_1772582 110.9544 20 4.352126 0.7028494
ILMN_1735698 130.5383 24 5.016678 0.0624152
ILMN_1653355 170.2414 22 6.979572 0
ILMN_1717783 104.5543 11 5.231923 0.92673
ILMN_1705025 115.2586 27 4.07298 0.504749
ILMN_1814316 127.8714 20 7.799761 0.1153324
ILMN_2359168 107.0452 16 5.182157 0.8466757
ILMN_1731507 114.7151 24 4.448337 0.5359566
ILMN_1787689 155.6995 26 11.73481 0
ILMN_1745607 114.0202 23 5.447938 0.568521
ILMN_2136495 106.505 15 5.251481 0.8670285
ILMN_1668111 108.1213 29 4.540921 0.807327

Total number of rows: 48803

Table truncated, full table size 1979 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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