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GEO accession:
Sample GSM62692
Query DataSets for GSM62692
Status
Public on Jun 30, 2005
Title
arf6 arf8 flowers_stage 1-14_untreated
Sample type
RNA
Source name
flowers, stage 1-14
Organism
Arabidopsis thaliana
Characteristics
arf6 arf8 flowers, stage 1-14
Treatment protocol
untreated
Growth protocol
Plants were grown under long day conditions for 6 weeks
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
Label
biotin
Label protocol
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
Description
arf6 arf8 flowers, untreated
Data processing
Affymetrix GeneChip Microarray Suite version 5.0
Submission date
Jun 28, 2005
Last update date
Aug 28, 2018
Contact name
Christine Ellis
Organization name
University of North Carolina at Chapel Hill
Street address
121 Coker Hall
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-3280
Country
USA
Platform ID
GPL198
Series (1)
GSE2847
Auxin induction in wild type and arf6 arf8 flowers
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
raw signal level
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
234.4
P
0.002556
AFFX-BioB-M_at
278.7
P
0.000044
AFFX-BioB-3_at
209.7
P
0.000147
AFFX-BioC-5_at
574.7
P
0.00011
AFFX-BioC-3_at
333.1
P
0.000044
AFFX-BioDn-5_at
531.1
P
0.000044
AFFX-BioDn-3_at
2407
P
0.000052
AFFX-CreX-5_at
5637.7
P
0.000044
AFFX-CreX-3_at
8210.6
P
0.000044
AFFX-DapX-5_at
12.1
A
0.287743
AFFX-DapX-M_at
5.2
A
0.5
AFFX-DapX-3_at
1.3
A
0.98333
AFFX-LysX-5_at
6.8
A
0.51489
AFFX-LysX-M_at
4.2
A
0.904333
AFFX-LysX-3_at
8.5
A
0.327079
AFFX-PheX-5_at
2.8
A
0.932322
AFFX-PheX-M_at
1.7
A
0.824672
AFFX-PheX-3_at
9.7
A
0.544587
AFFX-ThrX-5_at
1.9
A
0.814869
AFFX-ThrX-M_at
17.7
A
0.455413
Total number of rows:
22810
Table truncated, full table size
590 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62692.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
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