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|
| Status |
Public on Jun 30, 2005 |
| Title |
Columbia flowers_stage 1-14_IAA |
| Sample type |
RNA |
| |
|
| Source name |
flowers, stage 1-14
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Columbia flowers, stage 1-14, IAA treated
|
| Treatment protocol |
Flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20 30 minutes prior to harvest
|
| Growth protocol |
Plants were grown under long day conditions for 6 weeks
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
|
| Label |
biotin
|
| Label protocol |
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Description |
Columbia flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20 30 minutes prior to harvest
|
| Data processing |
Affymetrix GeneChip Microarray Suite version 5.0
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| |
|
| Submission date |
Jun 28, 2005 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Christine Ellis |
| Organization name |
University of North Carolina at Chapel Hill
|
| Street address |
121 Coker Hall
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-3280 |
| Country |
USA |
| |
|
| Platform ID |
GPL198 |
| Series (1) |
| GSE2847 |
Auxin induction in wild type and arf6 arf8 flowers |
|
| Relations |
| Reanalyzed by |
GSE119083 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
raw signal level |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
210.1 |
P |
0.003212 |
| AFFX-BioB-M_at |
289.6 |
P |
0.000044 |
| AFFX-BioB-3_at |
213.9 |
P |
0.00011 |
| AFFX-BioC-5_at |
628.9 |
P |
0.000147 |
| AFFX-BioC-3_at |
322.6 |
P |
0.00006 |
| AFFX-BioDn-5_at |
490.4 |
P |
0.000044 |
| AFFX-BioDn-3_at |
2259.5 |
P |
0.000052 |
| AFFX-CreX-5_at |
5218.2 |
P |
0.000044 |
| AFFX-CreX-3_at |
8179.6 |
P |
0.000044 |
| AFFX-DapX-5_at |
11.8 |
A |
0.262827 |
| AFFX-DapX-M_at |
15.6 |
A |
0.275146 |
| AFFX-DapX-3_at |
1.6 |
A |
0.981719 |
| AFFX-LysX-5_at |
8.6 |
A |
0.382599 |
| AFFX-LysX-M_at |
3.6 |
A |
0.981719 |
| AFFX-LysX-3_at |
13.1 |
A |
0.123572 |
| AFFX-PheX-5_at |
3 |
A |
0.957038 |
| AFFX-PheX-M_at |
2.7 |
A |
0.883887 |
| AFFX-PheX-3_at |
7.2 |
A |
0.772364 |
| AFFX-ThrX-5_at |
2 |
A |
0.949771 |
| AFFX-ThrX-M_at |
13.6 |
A |
0.617401 |
Total number of rows: 22810
Table truncated, full table size 590 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM62688.CEL.gz |
3.4 Mb |
(ftp)(http) |
CEL |
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