|
Status |
Public on May 15, 2022 |
Title |
CTRL-T0-03 |
Sample type |
SRA |
|
|
Source name |
M. galloprovincialis controls at time 0
|
Organism |
Mytilus galloprovincialis |
Characteristics |
tissue: hepatopancreas genotype: wild treatment: untreated time: time 0
|
Extracted molecule |
total RNA |
Extraction protocol |
hepatopancreas were removed, flash frozen on dry ice, and RNA was harvested using RNA-Later reagent. The libraries were prepared following the protocol TruSeq® Stranded mRNA Sample Preparation kit (Illumina)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
CTRL-T0-03
|
Data processing |
Basecalls were performed using NextSeq Control Software from Illumina RNA-seq reads were aligned to the Mytilus Galloprovincialis genome assembly mg10 using Star 2.50 Differential Expression were performed using Cuffdiff 2.21 Genome_build: mg10 from https://denovo.cnag.cat/mussel_data Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample Supplementary_files_format_and_content: tab-delimited text files with differential expression results
|
|
|
Submission date |
Nov 04, 2021 |
Last update date |
May 17, 2022 |
Contact name |
Mariella Baratti |
E-mail(s) |
[email protected]
|
Organization name |
CNR
|
Department |
Institute of Biosciences and Bioresources IBBR-CNR
|
Street address |
Via Madonna del Piano 10
|
City |
Sesto Fiorentino |
State/province |
Firenze |
ZIP/Postal code |
50019 |
Country |
Italy |
|
|
Platform ID |
GPL30930 |
Series (1) |
GSE188198 |
RNA-Seq of Mytilus galloprovincialis's hepatopancreas |
|
Relations |
BioSample |
SAMN22889821 |
SRA |
SRX12971791 |