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Sample GSM5671718 Query DataSets for GSM5671718
Status Public on May 15, 2022
Title CTRL-T0-03
Sample type SRA
 
Source name M. galloprovincialis controls at time 0
Organism Mytilus galloprovincialis
Characteristics tissue: hepatopancreas
genotype: wild
treatment: untreated
time: time 0
Extracted molecule total RNA
Extraction protocol hepatopancreas were removed, flash frozen on dry ice, and RNA was harvested using RNA-Later reagent.
The libraries were prepared following the protocol TruSeq® Stranded mRNA Sample Preparation kit (Illumina)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description CTRL-T0-03
Data processing Basecalls were performed using NextSeq Control Software from Illumina
RNA-seq reads were aligned to the Mytilus Galloprovincialis genome assembly mg10 using Star 2.50
Differential Expression were performed using Cuffdiff 2.21
Genome_build: mg10 from https://denovo.cnag.cat/mussel_data
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample
Supplementary_files_format_and_content: tab-delimited text files with differential expression results
 
Submission date Nov 04, 2021
Last update date May 17, 2022
Contact name Mariella Baratti
E-mail(s) [email protected]
Organization name CNR
Department Institute of Biosciences and Bioresources IBBR-CNR
Street address Via Madonna del Piano 10
City Sesto Fiorentino
State/province Firenze
ZIP/Postal code 50019
Country Italy
 
Platform ID GPL30930
Series (1)
GSE188198 RNA-Seq of Mytilus galloprovincialis's hepatopancreas
Relations
BioSample SAMN22889821
SRA SRX12971791

Supplementary file Size Download File type/resource
GSM5671718_CTRL-T0-03.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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