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Sample GSM5631 Query DataSets for GSM5631
Status Public on Apr 05, 2003
Title Spleen vs IL4 Treated B cell 60min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name IL4 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with IL4 for 60min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE386 Spleen vs IL4 Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.941046 26011.6 2979.35 32837 4142.62 30291 3909 6474.73 710.26 848.28 776.119 844 771 38.5717 54.7212 0
2 0.0567828 115.622 131.772 929.8 882.04 906 861 102.983 145.037 827.15 740.78 828 742 39.529 52.2394 0
3 0 29.3512 30.4964 833.458 764.958 838 770.5 31.8815 26.6808 827.642 761.872 825 761 29.1935 43.0428 0
4 -0.0914294 73.626 59.6488 859.125 785.375 861.5 782 61.2886 77.2043 800.116 740.211 796 731 36.9269 46.783 0
5 0 24.3194 23.915 765.833 717.75 758.5 712.5 22.4957 37.2807 770.807 722.533 770 719.5 23.1464 35.2737 0
6 -0.319972 144.005 68.9295 924.783 787.478 921 783 54.2469 67.9357 789.985 730.09 786 725 37.9024 41.8809 0
7 0 42.5259 29.5239 787.28 713.12 776 710 45.517 39.3259 769.981 722.019 764 718 42.1748 41.7912 0
8 0 29.4519 28.1377 788.464 720.036 787.5 715.5 21.426 43.901 786.497 726.465 786 724 28.5306 40.7757 0
9 0.287932 1290.74 2504.79 2356 3511.96 2361.5 3543 173.005 289.873 770.894 717.681 767 712 31.6141 40.9439 0.9564894
10 0.292176 323.357 633.662 1086.56 1479.68 1075 1404 101.354 266.679 753.078 699.588 754 703 22.4035 37.0873 0.970587663
11 0 21.7949 26.9782 742.792 688.75 741.5 677.5 13.8658 36.2158 744.993 694.146 743 692 20.9139 39.4681 0
12 0.0782988 57.2695 68.5839 815.125 767.208 808.5 759.5 41.825 58.2267 773.946 710.231 771.5 711 29.3876 37.8398 0
13 0.0649393 43.5839 50.6134 796.043 757.783 789 754 27.2021 35.9747 770.55 722.872 768 723 32.5708 42.4143 0
14 0.209528 271.85 440.411 1014.52 1265.09 1014 1244 37.3033 100.175 746.397 715.232 748 713 18.8722 31.0624 0.69603695
15 0.204582 1057.33 1693.53 2027.04 2616.17 1502.5 1767.5 1322.3 2054.46 751.397 709.206 753 710.5 22.2748 33.229 0
16 0.603019 736.287 2951.66 1638.13 4028.5 1357.5 2947.5 573.569 2076.03 750.878 700.197 752 702 19.496 34.8788 0
17 -0.637608 305.794 70.4405 1068.86 769.091 1036.5 768.5 149.641 56.9343 767.133 707.563 766 709 22.6418 34.3755 -2.118087929
18 -0.0295682 88.5876 82.757 852.885 794.731 854 800.5 24.8714 35.0948 777.433 719.86 779 716 23.1645 34.0675 -0.098223434
19 0.404256 1246.45 3161.77 2301.27 4227 2314.5 4197.5 457.556 1063.98 765.705 704.103 765 704 25.087 37.6677 1.342909364
20 -0.0258133 1913.3 1802.89 3110.46 2708.67 3080.5 2712.5 406.472 330.32 747.894 709.007 749 710 19.9787 36.3286 -0.085749926

Total number of rows: 16273

Table truncated, full table size 1956 Kbytes.




Supplementary data files not provided
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