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Sample GSM559013 Query DataSets for GSM559013
Status Public on Jun 30, 2010
Title Dmrt1 KO DHH-cre 19840002_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: DHH-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22508 Conditional Dmrt1 knockout gene expression (phase 8)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1576.8413
NM_001001144 7520.5379
NM_001001152 306.9137
NM_001001160 3851.7081
NM_001001176 10154.3766
NM_001001177 5372.3766
NM_001001179 413.1269
NM_001001180 348.6598
NM_001001181 6714.3766
NM_001001182 2564.3766
NM_001001183 2110.0727
NM_001001184 4425.4246
NM_001001186 214.3669
NM_001001187 210.5557
NM_001001295 2856.8864
NM_001001297 338.3999
NM_001001303 44572.5801
NM_001001309 221.7646
NM_001001318 350.3825
NM_001001319 58.0529

Total number of rows: 25631

Table truncated, full table size 493 Kbytes.




Supplementary file Size Download File type/resource
GSM559013.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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