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Sample GSM5528 Query DataSets for GSM5528
Status Public on Apr 05, 2003
Title Spleen vs CpG-oligodeoxynucleotide Treated B cell 120min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CpG-oligodeoxynucleotide Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CpG-oligodeoxynucleotide for 120min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE378 Spleen vs CpG-oligodeoxynucleotide Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 0.261579 34637.8 63260 65516.9 57813.8 65517 57300 0.729907 6174.1 773.662 642.278 762 637 53.1093 40.2524 0
2 0.11548 200.376 261.411 1046.65 801 1034 794.5 70.5651 63.4413 767.803 622.299 758 619 48.011 39.3742 0
3 0.0345549 72.8307 78.8622 820.481 653.889 801 652 61.8238 49.1069 788.625 634.706 775.5 628.5 66.0131 42.5706 0
4 -0.142553 84.8243 61.0896 808.704 630.741 808 637 31.7185 43.1167 760.747 631.448 753 630.5 40.7985 35.9195 0
5 0.0516717 53.2352 59.9613 761.731 630.808 764 631 39.7206 34.176 763.026 629.179 755 629.5 44.0428 35.9386 0
6 0.0730644 448.31 530.448 1522.96 1046.07 1556 1088 169.207 159.07 771.717 630.774 769 635 39.2698 38.9638 0
7 -0.0655552 83.8496 72.1018 801.458 624 775 625.5 78.377 44.4336 752.886 613.148 751 607 39.2211 37.0499 0
8 0.0946977 44.6774 55.5629 745 613.16 739 618 37.2469 33.6733 759.567 615.172 751 614 43.9403 33.2285 0
9 0.295937 3690.44 7294.83 8789.81 6186.69 8838.5 6188.5 463.914 928.937 771.635 625.968 762.5 625.5 52.4113 39.1695 0.983081435
10 0.27845 716.036 1359.52 2072.8 1776.16 2146 1769 582.136 530.223 780.746 642.169 775 642 48.6381 47.3068 0
11 -0.0539468 66.3752 58.6218 768 606.909 769.5 601.5 40.3603 24.325 749.433 608.411 746 605 41.687 40.7568 0
12 0.035124 65.8034 71.3464 767.893 609.321 768.5 608 43.6283 37.2281 748.3 597.08 748 594 35.1854 37.3479 0
13 -0.00118569 53.1454 53.0005 735.192 591.615 740.5 580 37.0643 43.534 737.542 597.75 737 593.5 30.0463 33.2133 0
14 0.223799 570.194 954.601 1743.52 1389.2 1439 911 694.615 749.218 751.358 597.391 745 598 42.7583 35.3761 0
15 0.284483 3162.2 6087.95 7586.68 5232.11 8121 5458 4698.02 3715.74 745.242 590.852 745 587 35.5755 35.704 0
16 0.315863 1817.39 3761.08 4530 3522.24 4702 3749 1255.04 1229.56 743.765 596.517 738 595 36.3174 38.3079 0
17 -0.510202 874.379 270.083 2278.39 772.522 1776 739 1174.27 119.899 742.873 596.665 738.5 599.5 38.3855 40.3085 0
18 0.282088 475.517 910.446 1561.44 1352.22 1570 1387 175.575 239.881 751.05 596 749 592 39.5797 39.1121 0.937076052
19 0.395695 5327.74 13250.7 12339.1 10793.8 12860.5 10407.5 1613.77 1671.86 767.399 601.503 760 601 47.6803 40.5549 1.314470338
20 0.0145678 5060.42 5233.04 11796 4577.56 11439 4480 1302.72 672.521 774.642 608.692 767 600 46.7837 41.1121 0.048393184

Total number of rows: 16273

Table truncated, full table size 1958 Kbytes.




Supplementary data files not provided
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