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Sample GSM550399 Query DataSets for GSM550399
Status Public on Aug 11, 2010
Title WB-H-2817
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Male
ethnicity: Afican American
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.975169 0.8076416
ILMN_2055271 8.917624 0.1080369
ILMN_1736007 0.04991388 0.4097497
ILMN_2383229 -7.867716 0.9011858
ILMN_1806310 -2.809607 0.5928854
ILMN_1779670 2.64775 0.2898551
ILMN_2321282 1.009149 0.345191
ILMN_1671474 1.930285 0.3135705
ILMN_1772582 -1.647216 0.5098814
ILMN_1735698 -2.366766 0.5586298
ILMN_1653355 12.00562 0.06455863
ILMN_1717783 -13.8472 0.9947299
ILMN_1705025 1.754006 0.3175231
ILMN_1814316 -5.310068 0.7681159
ILMN_2359168 -2.338986 0.5546772
ILMN_1731507 -1.933081 0.5296443
ILMN_1787689 8.767273 0.1106719
ILMN_1745607 -5.420239 0.7786561
ILMN_2136495 -3.858883 0.6666667
ILMN_1668111 -6.161421 0.8168643

Total number of rows: 48803

Table truncated, full table size 1467 Kbytes.




Supplementary file Size Download File type/resource
GSM550399_4856076044_I_Raw.txt.gz 528.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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