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Sample GSM550398 Query DataSets for GSM550398
Status Public on Aug 11, 2010
Title WB-H-2846
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 18
gender: Female
ethnicity: Caucasian
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.743367 0.5573123
ILMN_2055271 1.998327 0.3372859
ILMN_1736007 9.317884 0.1040843
ILMN_2383229 -2.200671 0.5823452
ILMN_1806310 2.230327 0.3254282
ILMN_1779670 6.571999 0.1567852
ILMN_2321282 10.14564 0.08695652
ILMN_1671474 -1.425494 0.5388669
ILMN_1772582 -8.691661 0.8985507
ILMN_1735698 1.284946 0.3689065
ILMN_1653355 15.20396 0.03820817
ILMN_1717783 1.742928 0.3517787
ILMN_1705025 0.05302322 0.4532279
ILMN_1814316 -1.988488 0.5691699
ILMN_2359168 14.47821 0.04347826
ILMN_1731507 -3.826193 0.6811594
ILMN_1787689 -3.663295 0.6732543
ILMN_1745607 -3.323693 0.657444
ILMN_2136495 -0.1523537 0.4664032
ILMN_1668111 -3.155952 0.6508564

Total number of rows: 48803

Table truncated, full table size 1478 Kbytes.




Supplementary file Size Download File type/resource
GSM550398_4856076044_H_Raw.txt.gz 529.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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