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Sample GSM550394 Query DataSets for GSM550394
Status Public on Aug 11, 2010
Title WB-H-1149
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 9
gender: Female
ethnicity: Asian
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.067851 0.7944664
ILMN_2055271 6.853051 0.1422925
ILMN_1736007 -2.490596 0.6350461
ILMN_2383229 -10.15446 0.9538867
ILMN_1806310 -0.02246116 0.4703557
ILMN_1779670 -1.68056 0.5928854
ILMN_2321282 9.200664 0.08300395
ILMN_1671474 0.4660307 0.4492754
ILMN_1772582 4.493953 0.2332016
ILMN_1735698 -1.260705 0.5586298
ILMN_1653355 12.22026 0.03820817
ILMN_1717783 -10.28182 0.9565217
ILMN_1705025 7.629827 0.1119895
ILMN_1814316 0.5563058 0.4466403
ILMN_2359168 -9.81576 0.9512516
ILMN_1731507 -4.841598 0.7483531
ILMN_1787689 -1.894152 0.6113307
ILMN_1745607 -3.201424 0.6666667
ILMN_2136495 -2.054058 0.6179183
ILMN_1668111 -8.716404 0.9183136

Total number of rows: 48803

Table truncated, full table size 1461 Kbytes.




Supplementary file Size Download File type/resource
GSM550394_4856050051_I_Raw.txt.gz 524.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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