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Sample GSM550390 Query DataSets for GSM550390
Status Public on Aug 11, 2010
Title WB-H-5679
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 16
gender: Female
ethnicity: Hispanic
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.56782 0.685112
ILMN_2055271 5.010485 0.173913
ILMN_1736007 -0.3952 0.4492754
ILMN_2383229 -11.83876 0.9868248
ILMN_1806310 6.394423 0.1251647
ILMN_1779670 2.282553 0.284585
ILMN_2321282 10.88319 0.05533597
ILMN_1671474 2.022887 0.2938077
ILMN_1772582 -2.421185 0.5889328
ILMN_1735698 -1.56315 0.541502
ILMN_1653355 16.33698 0.02503294
ILMN_1717783 -2.804234 0.6218709
ILMN_1705025 4.041903 0.2055336
ILMN_1814316 -5.614698 0.8129117
ILMN_2359168 -5.059953 0.7891963
ILMN_1731507 -4.752409 0.7681159
ILMN_1787689 18.6099 0.01449275
ILMN_1745607 -1.104379 0.4980237
ILMN_2136495 -7.815568 0.9249012
ILMN_1668111 -10.66526 0.9802371

Total number of rows: 48803

Table truncated, full table size 1499 Kbytes.




Supplementary file Size Download File type/resource
GSM550390_4856050050_I_Raw.txt.gz 529.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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