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Sample GSM550383 Query DataSets for GSM550383
Status Public on Aug 11, 2010
Title WB-H-0537
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 8
gender: Male
ethnicity: Caucasian/Asian
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.895092 0.7602108
ILMN_2055271 3.467077 0.201581
ILMN_1736007 -1.853969 0.5902503
ILMN_2383229 -6.689272 0.9301713
ILMN_1806310 -2.99878 0.6785244
ILMN_1779670 1.762983 0.2898551
ILMN_2321282 7.093901 0.1014493
ILMN_1671474 2.743834 0.2397892
ILMN_1772582 1.981054 0.2793149
ILMN_1735698 1.786904 0.2885376
ILMN_1653355 2.255656 0.2648221
ILMN_1717783 -1.730657 0.5731225
ILMN_1705025 1.056673 0.3333333
ILMN_1814316 -4.551312 0.8089592
ILMN_2359168 -4.121196 0.7786561
ILMN_1731507 -0.05290686 0.4229249
ILMN_1787689 -0.8195485 0.4967062
ILMN_1745607 3.22991 0.2121212
ILMN_2136495 -2.451912 0.6337286
ILMN_1668111 -6.216029 0.914361

Total number of rows: 48803

Table truncated, full table size 1480 Kbytes.




Supplementary file Size Download File type/resource
GSM550383_4676163060_G_Raw.txt.gz 527.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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