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Sample GSM550378 Query DataSets for GSM550378
Status Public on Aug 11, 2010
Title WB-H-9868
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 4
gender: Female
ethnicity: Caucasian
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.837066 0.7931489
ILMN_2055271 11.90864 0.08432148
ILMN_1736007 -0.3810715 0.4413702
ILMN_2383229 -9.469846 0.8932806
ILMN_1806310 0.7530141 0.3886693
ILMN_1779670 3.975494 0.2555995
ILMN_2321282 2.19323 0.3241107
ILMN_1671474 -4.937941 0.7075099
ILMN_1772582 0.3082314 0.4110672
ILMN_1735698 5.01493 0.2318841
ILMN_1653355 14.94804 0.05533597
ILMN_1717783 -6.270421 0.770751
ILMN_1705025 -4.071709 0.6587615
ILMN_1814316 -0.8614146 0.4716733
ILMN_2359168 3.72179 0.2648221
ILMN_1731507 -8.335095 0.8603426
ILMN_1787689 0.6688951 0.3926219
ILMN_1745607 2.798948 0.3017128
ILMN_2136495 -5.840261 0.7562582
ILMN_1668111 -1.637571 0.5177866

Total number of rows: 48803

Table truncated, full table size 1478 Kbytes.




Supplementary file Size Download File type/resource
GSM550378_4676163046_H_Raw.txt.gz 530.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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