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Sample GSM550371 Query DataSets for GSM550371
Status Public on Aug 11, 2010
Title WB-H-2704
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 5
gender: Male
ethnicity: Hispanic
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 0.2600873 0.4137022
ILMN_2055271 5.524956 0.1778656
ILMN_1736007 1.616727 0.3346508
ILMN_2383229 -1.295936 0.5046113
ILMN_1806310 0.3038666 0.4123847
ILMN_1779670 2.601157 0.2898551
ILMN_2321282 -0.9377668 0.4914361
ILMN_1671474 -4.389495 0.7246377
ILMN_1772582 -1.597201 0.5322793
ILMN_1735698 -1.38183 0.5098814
ILMN_1653355 11.30827 0.0685112
ILMN_1717783 -7.493006 0.886693
ILMN_1705025 1.905749 0.3201581
ILMN_1814316 1.194927 0.3530962
ILMN_2359168 -3.028203 0.6442688
ILMN_1731507 -1.110284 0.5006588
ILMN_1787689 1.767326 0.3267457
ILMN_1745607 -11.24397 0.9762846
ILMN_2136495 -10.85488 0.9710145
ILMN_1668111 -1.744016 0.5428195

Total number of rows: 48803

Table truncated, full table size 1467 Kbytes.




Supplementary file Size Download File type/resource
GSM550371_4676163046_A_Raw.txt.gz 526.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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