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Sample GSM550358 Query DataSets for GSM550358
Status Public on Aug 11, 2010
Title WB-H-1359
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Female
ethnicity: Hispanic
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.751989 0.4822134
ILMN_2055271 0.9961209 0.3530962
ILMN_1736007 -5.003409 0.6837944
ILMN_2383229 -9.66227 0.9235837
ILMN_1806310 -6.152213 0.7615283
ILMN_1779670 -1.967252 0.4980237
ILMN_2321282 21.61829 0.03030303
ILMN_1671474 -2.416689 0.5388669
ILMN_1772582 -2.271531 0.5270092
ILMN_1735698 -2.364165 0.5322793
ILMN_1653355 14.55583 0.06324111
ILMN_1717783 -4.124868 0.629776
ILMN_1705025 -8.055743 0.8682477
ILMN_1814316 -6.378036 0.7812912
ILMN_2359168 -1.157042 0.4519104
ILMN_1731507 -11.71468 0.9657444
ILMN_1787689 8.702967 0.115942
ILMN_1745607 -3.7813 0.6060606
ILMN_2136495 -7.940873 0.8656126
ILMN_1668111 -6.788739 0.8050066

Total number of rows: 48803

Table truncated, full table size 1464 Kbytes.




Supplementary file Size Download File type/resource
GSM550358_4493594520_K_Raw.txt.gz 526.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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