NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550339 Query DataSets for GSM550339
Status Public on Aug 11, 2010
Title WB-H-6680
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 58
gender: Male
ethnicity: Caucasian
healthy control: Still
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1809034 7.867934 0.06324111
ILMN_1660305 77.64887 0.001317523
ILMN_1792173 122.5711 0.001317523
ILMN_1762337 -4.839063 0.8603426
ILMN_2055271 1.7375 0.259552
ILMN_1736007 1.874584 0.2490119
ILMN_1814316 0.5090585 0.3412385
ILMN_2359168 -4.487967 0.8366271
ILMN_1731507 -0.7407995 0.455863
ILMN_1787689 0.8473544 0.3188406
ILMN_1745607 -8.650506 0.9907773
ILMN_2136495 -7.47099 0.9762846
ILMN_1668111 -4.194608 0.8089592
ILMN_2295559 0.7382382 0.3241107
ILMN_1735045 -0.1949957 0.397892
ILMN_1680754 2.064984 0.2397892
ILMN_2375184 3.391223 0.168643
ILMN_1659452 6.55161 0.07509881
ILMN_1767388 -3.860297 0.7786561
ILMN_1675204 -5.503962 0.9090909

Total number of rows: 48803

Table truncated, full table size 1498 Kbytes.




Supplementary file Size Download File type/resource
GSM550339_4461154018_F_Raw.txt.gz 528.0 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap