NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549516 Query DataSets for GSM549516
Status Public on Aug 11, 2010
Title WB-PSLE-2420
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Female
ethnicity: Caucasian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.295327 0.7351779
ILMN_2055271 6.063314 0.1963109
ILMN_1736007 -0.2325495 0.4571805
ILMN_2383229 -7.348225 0.8405797
ILMN_1806310 3.036834 0.3135705
ILMN_1779670 8.993827 0.1212121
ILMN_2321282 -0.9880078 0.5019763
ILMN_1671474 -4.140162 0.6772069
ILMN_1772582 -0.3342831 0.4637681
ILMN_1735698 5.895823 0.201581
ILMN_1653355 6.774846 0.1699605
ILMN_1717783 0.8569993 0.3899868
ILMN_1705025 -0.9203837 0.4993412
ILMN_1814316 -6.322517 0.7865613
ILMN_2359168 -10.68405 0.9249012
ILMN_1731507 0.06070661 0.4387352
ILMN_1787689 -1.650955 0.5494071
ILMN_1745607 -9.567786 0.9025033
ILMN_2136495 -2.318066 0.5849802
ILMN_1668111 -10.50294 0.9209486

Total number of rows: 48803

Table truncated, full table size 1481 Kbytes.




Supplementary file Size Download File type/resource
GSM549516_4856076053_B_Raw.txt.gz 528.7 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap