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Sample GSM549514 Query DataSets for GSM549514
Status Public on Aug 11, 2010
Title WB-PSLE-2919
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -7.240731 0.801054
ILMN_2055271 29.94082 0.01185771
ILMN_1736007 1.326956 0.397892
ILMN_2383229 9.538908 0.1212121
ILMN_1806310 -0.706387 0.4953887
ILMN_1779670 11.12207 0.09090909
ILMN_2321282 9.570768 0.1212121
ILMN_1671474 15.39144 0.05533597
ILMN_1772582 6.786415 0.1805007
ILMN_1735698 0.1551786 0.4426877
ILMN_1653355 43.11072 0.001317523
ILMN_1717783 -3.963032 0.6429513
ILMN_1705025 10.17125 0.1067194
ILMN_1814316 -14.19184 0.9710145
ILMN_2359168 8.463861 0.1396574
ILMN_1731507 -13.78314 0.9710145
ILMN_1787689 -1.148652 0.5125165
ILMN_1745607 -3.45503 0.6245059
ILMN_2136495 -9.608246 0.8761528
ILMN_1668111 -10.42057 0.8998682

Total number of rows: 48803

Table truncated, full table size 1466 Kbytes.




Supplementary file Size Download File type/resource
GSM549514_4856076044_K_Raw.txt.gz 525.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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